Difference between revisions of "ProbABEL"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_CONF - sample config file directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:22, 6 December 2019
Description
Genome-wide association analysis of imputed data. ProbABEL software package is used for the analysis of genome-wide imputed SNP data and quantitative, binary, and time-till-event outcomes under linear, logistic, and Cox proportional hazards models, respectively. For quantitative traits, the package also implements a fast two-step mixed model-based score test for association in samples with differential relationships, facilitating analysis in family-based studies, studies performed in human genetically isolated populations and outbred animal populations.
Environment Modules
Run module spider probabel to find out what environment modules are available for this application.
System Variables
- HPC_PROBABEL_DIR - installation directory
- HPC_PROBABEL_BIN - executable directory
- HPC_PROBABEL_CONF - sample config file directory