Difference between revisions of "OptiType"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - test directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_CONF - config directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:22, 6 December 2019
Description
OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.
Required Modules
Serial
- optitype
System Variables
- HPC_OPTITYPE_DIR - installation directory
- HPC_OPTITYPE_BIN - executable directory
- HPC_OPTITYPE_EXE - test directory
- HPC_OPTITYPE_DOC - documentation directory
- HPC_OPTITYPE_CONF - config directory