Difference between revisions of "Kallisto"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:NGSCategory:RNA-Seq {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|kallisto}} |{{#vardefine:url|http://pachterlab...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| Line 35: | Line 35: | ||
--> | --> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:21, 6 December 2019
Description
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.
Required Modules
Serial
- kallisto
System Variables
- HPC_KALLISTO_DIR - installation directory