Difference between revisions of "LncScore"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|lncscore}} |{{#vardefine:url|https://github.com/WGLab/ln...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
* HPC_LNCSCORE_BIN - executable directory | * HPC_LNCSCORE_BIN - executable directory | ||
* HPC_LNCSCORE_DOC - documentation directory | * HPC_LNCSCORE_DOC - documentation directory | ||
Latest revision as of 21:21, 6 December 2019
Description
lncScore is a python package for the identification of lncRNA from the assembled novel transcripts, and it also can be used to calculate the coding potential.
Environment Modules
Run module spider lncscore to find out what environment modules are available for this application.
System Variables
- HPC_LNCSCORE_DIR - installation directory
- HPC_LNCSCORE_BIN - executable directory
- HPC_LNCSCORE_DOC - documentation directory
- HPC_LNCSCORE_EXE - examples directory
- HPC_LNCSCORE_DAT - data directory
- HPC_LNCSCORE_SCP - tools directory
Citation
If you publish research that uses lncscore you have to cite it as follows: