Difference between revisions of "Illumina-utils"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:21, 6 December 2019
Description
This is a small library and a bunch of clients to perform various operations on FASTQ files (such as demultiplexing raw Illumina files, merging partial or complete overlaps, and/or performing quality filtering). It works with paired-end FASTQ files and has been tested with Illumina runs processed with CASAVA version 1.8.0 or higher.
Required Modules
Serial
- gcc/5.2.0
- illumina-utils
System Variables
- HPC_ILLUMINA-UTILS_DIR - installation directory
- HPC_ILLUMINA-UTILS_BIN - executable directory
Citation
If you publish research that uses illumina-utils you have to cite it as follows: