Difference between revisions of "Autometa"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|autometa}} |{{#vardefine:url|https://bitbucket.org/jason_c_kwan/autometa/src...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:19, 6 December 2019
Description
An automated binning pipeline for single metagenomes, in particular host-associated and highly complex ones.
Environment Modules
Run module spider autometa to find out what environment modules are available for this application.
System Variables
- HPC_AUTOMETA_DIR - installation directory
- HPC_AUTOMETA_BIN - executable directory
Citation
If you publish research that uses autometa you have to cite it as follows: