Difference between revisions of "BreakDancer"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_LIB - library directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:16, 6 December 2019
Description
BreakDancer is a Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation.
Environment Modules
Run module spider breakdancer to find out what environment modules are available for this application.
System Variables
- HPC_BREAKDANCER_DIR - installation directory
- HPC_BREAKDANCER_BIN - executable directory
- HPC_BREAKDANCER_LIB - library directory