Difference between revisions of "DynamicDBG"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|dynamicdbg}} |{{#vardefine:url|https://github.com/csirac/dynamicDBG}} <!--CO...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| − | * HPC_{{#uppercase:{{#var:app}}}} | + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 20:23, 5 July 2019
Description
Compact data structures for the representation of de Bruijn graphs are important for genome sequence assembly. A fully dynamic data structure supporting efficient and exact membership queries for de Bruijn graphs was recently proposed in [1]. This software is an implementation of the data structure in [1] with dynamic edges (and not dynamic nodes).
Environment Modules
Run module spider dynamicdbg to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:dynamicdbg}}_DIR - installation directory
- HPC_{{#uppercase:dynamicdbg}}_BIN - executable directory