Difference between revisions of "Oases"
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Revision as of 17:30, 5 April 2018
Description
Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. It was developed by Marcel Schulz (MPI for Molecular Genomics) and Daniel Zerbino (previously at the European Bioinformatics Institute (EMBL-EBI), now at UC Santa Cruz).
Required Modules
Serial
- oases
System Variables
- HPC_{{#uppercase:oases}}_DIR - installation directory
- HPC_OASES_BIN
Validation
- Validated 4/5/2018