Difference between revisions of "FragGeneScan"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) |
|||
| Line 36: | Line 36: | ||
Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: [http://nar.oxfordjournals.org/content/early/2010/08/29/nar.gkq747.abstract 10.1093/nar/gkq747] | Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: [http://nar.oxfordjournals.org/content/early/2010/08/29/nar.gkq747.abstract 10.1093/nar/gkq747] | ||
|}} | |}} | ||
| + | =Validation= | ||
| + | * Validated 4/5/2018 | ||
Revision as of 15:43, 5 April 2018
Description
FragGeneScan is an application for finding (fragmented) genes in short reads.
Required Modules
Serial
- fraggenescan
System Variables
- HPC_{{#uppercase:fraggenescan}}_DIR - installation directory
- HPC_FRAGGENESCAN_BIN - executable directory.
Additional Information
Two convenience scripts are provided within the FragGeneScan distribution - run_FragGeneScan.pl and post_process.pl - in addition to the main FragGeneScan binary.
Read the usage documentation for details on how to run the program.
Citation
Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: 10.1093/nar/gkq747
Validation
- Validated 4/5/2018