P53MH: Difference between revisions
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
p53MH requires a data file. You can copy the example data file to your current working directory with the follow command: | |||
ml p53mh | |||
cp $HPC_P53MH_DAT/* . | |||
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{{#if: {{#var: testing}}|==Performance== | {{#if: {{#var: testing}}|==Performance== | ||
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Revision as of 16:19, 23 February 2017
Description
Computes a score between 0 and 100 for each site in the DNA sequence of a gene. A high score indicates an increased probability that n nucleotides at that and subsequent sites represent a p53 binding site, where n = 2 x 10 + (selected length of spacer region).
Required Modules
Serial
- p53mh
System Variables
- HPC_{{#uppercase:p53mh}}_DIR - installation directory
- HPC_{{#uppercase:p53mh}}_BIN - executable directory
- HPC_{{#uppercase:p53mh}}_DAT - example data directory
Additional Information
p53MH requires a data file. You can copy the example data file to your current working directory with the follow command:
ml p53mh cp $HPC_P53MH_DAT/* .
Citation
If you publish research that uses p53mh you have to cite it as follows: