Difference between revisions of "P53MH"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|p53mh}} |{{#vardefine:url|http://www.jurgott.org/linkage/p5...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_DAT - example data directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 16:19, 23 February 2017
Description
Computes a score between 0 and 100 for each site in the DNA sequence of a gene. A high score indicates an increased probability that n nucleotides at that and subsequent sites represent a p53 binding site, where n = 2 x 10 + (selected length of spacer region).
Required Modules
Serial
- p53mh
System Variables
- HPC_{{#uppercase:p53mh}}_DIR - installation directory
- HPC_{{#uppercase:p53mh}}_BIN - executable directory
- HPC_{{#uppercase:p53mh}}_DAT - example data directory
Additional Information
WRITE_ADDITIONAL_INSTRUCTIONS_ON_RUNNING_THE_SOFTWARE_IF_NECESSARY
Citation
If you publish research that uses p53mh you have to cite it as follows: