Search results

• ATRAM
  ...M automated target restricted assembly method a fast method for assembling loci across divergent taxa from next-generation sequencing data. BMC Bioinformat aTRAM does targeted ''de novo'' assembly of loci from paired-end Illumina runs and consists of the following tools:
  3 KB (350 words) - 15:23, 12 August 2022
• GPhoCS
  ...rlo (MCMC) to jointly sample model parameters and genealogies at the input loci.
  3 KB (300 words) - 21:20, 6 December 2019
• QTL-seq
  loci in crop plants. QTL-seq was adapted from MutMap to identify quantitative trait loci. It utilizes sequences pooled from two segregating
  3 KB (410 words) - 19:05, 31 January 2022
• BUCKy
  ...using Bayesian concordance analysis. BUCKy does not assume that genes (or loci) all have the same topology. Instead, groups of genes sharing the same tree
  3 KB (386 words) - 13:15, 15 August 2022
• Phyluce
  * The separation of UCE loci from assembled contigs ...data collected from UCE loci and also data collection from other types of loci for phylogenomic studies at the species, population, and individual levels.
  4 KB (517 words) - 18:23, 21 August 2022
• Mikado
  expressed loci, assign a representative transcript and return a set of gene with short or disrupted CDS. Loci are first defined based on overlap
  4 KB (495 words) - 19:45, 18 August 2022
• Bayenv
  Loci involved in local adaptation can potentially be identified by an unusual co ...Di Rienzo A., Pritchard J.K. Using Environmental Correlations to Identify Loci Underlying Local Adaptation. Genetics. 2010]
  3 KB (388 words) - 19:03, 10 June 2022
• BayeScan
  BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele freq Foll M and OE Gaggiotti (2008) A genome scan method to identify selected loci appropriate for both dominant and codominant markers: A Bayesian perspectiv
  3 KB (402 words) - 18:10, 12 August 2022
• HapQTL
  hapQTL: haplotype Quantitative Loci
  2 KB (247 words) - 18:15, 15 August 2022
• Giggle
  ...search engine that identifies and ranks the significance of shared genomic loci between query features and thousands of genome interval files.
  2 KB (268 words) - 20:58, 24 February 2023
• Kvarq
  The program KvarQ performs rapid in silico genotyping for selected loci (e.g. phylogenetic SNPs, drug resistance mutations) in bacterial genome seq
  2 KB (287 words) - 15:26, 21 June 2023
• QTLtools
  ...o from the raw sequence data to collection of molecular Quantitative Trait Loci (QTLs) in few easy-to-perform steps.
  2 KB (297 words) - 20:58, 21 August 2022
• EMMAX
  ...cy obtained by EMMA algorithm, EMMAX takes advantage of the fact that each loci explains only a small fraction of complex traits, which allows us to avoid
  3 KB (304 words) - 15:06, 15 August 2022
• Captus
  ...s is a toolkit for the assembly of phylogenomic datasets (many samples and loci) from High-Throughput Sequencing (a.k.a. Next Generation Sequencing) data.
  3 KB (321 words) - 16:36, 16 November 2022
• RNAmmer
  ...s both strands. The spotter model is constructed from highly conserved loci within a structural alignment of known rRNA sequences. Once the spotter
  3 KB (328 words) - 17:35, 10 June 2022
• LFMM
  ...S.D. Schoville, G. Bouchard, O. François Testing for associations between loci and environmental gradients using latent factor mixed models Molecular Biol
  3 KB (337 words) - 19:50, 15 August 2022
• GUAVA
  ...GUAVA can compare ATAC-seq signals from two conditions to identify genomic loci with differentially enriched ATAC-seq signals. Furthermore, GUAVA provides
  3 KB (351 words) - 21:20, 6 December 2019
• SOLAR
  ...iple quantitative traits and/or discrete traits which may involve multiple loci (oligogenic analysis), dominance effects, household effects, and interactio
  3 KB (328 words) - 21:24, 6 December 2019
• Gubbins
  ...tions In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently cons
  3 KB (335 words) - 17:28, 15 August 2022
• Mantis
  ...mended, as shorter reads are unlikely to entirely cover the microsatellite loci, and will be discarded after failing the quality control filters.
  3 KB (368 words) - 17:20, 27 May 2022

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