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• WGS Assembler
  |{{#vardefine:url|http://wgs-assembler.sourceforge.net/wiki/index.php?title=Main_Page}} ...nomics starting in 1999. It was released to SourceForge in 2004 as the wgs-assembler under the GNU General Public License. The pipeline revised for 454 data was
  3 KB (359 words) - 20:56, 12 August 2022

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• LIGR
  |{{#vardefine:url|http://sourceforge.net/projects/ligr-assembler/}} ...bly program. It was derived from TIGR Assembler and addresses some of TIGR Assembler's shortcomings.
  2 KB (249 words) - 19:55, 15 August 2022
• WGS Assembler
  |{{#vardefine:url|http://wgs-assembler.sourceforge.net/wiki/index.php?title=Main_Page}} ...nomics starting in 1999. It was released to SourceForge in 2004 as the wgs-assembler under the GNU General Public License. The pipeline revised for 454 data was
  3 KB (359 words) - 20:56, 12 August 2022
• Wgs
  |{{#vardefine:url|http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=Main_Paget}} ...nomics starting in 1999. It was released to SourceForge in 2004 as the wgs-assembler under the GNU General Public License. The pipeline revised for 454 data was
  3 KB (375 words) - 20:55, 12 August 2022
• SOAPdenovo-Trans
  ...alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-len
  2 KB (283 words) - 00:05, 22 August 2022
• PsiCLASS
  ...sets in an experiment. PsiCLASS is both a transcript assembler and a meta-assembler, producing separate transcript sets for the individual samples and a unifie ...efore, it can be effectively used as a multi-sample and as a single-sample assembler, as well as in conventional assemble-and-merge protocols.
  4 KB (480 words) - 15:00, 14 December 2022
• YASM
  ...censed assembler that is designed from the ground up to allow for multiple assembler syntaxes to be supported (e.g. NASM, GNU AS, etc.) in addition to multiple
  2 KB (292 words) - 17:53, 22 August 2022
• Stringtie
  ...into potential transcripts. It is primarily a genome-guided transcriptome assembler, although it can borrow algorithmic techniques from de novo genome assembly
  3 KB (301 words) - 20:45, 12 August 2022
• IDBA-MT
  ...De Novo short read assembler for meta-transcriptome. It is purely de novo assembler based on paired-end RNA sequencing reads only. IDBA-MT is a post-processing
  3 KB (315 words) - 21:21, 6 December 2019
• MetaVelvet
  Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa o MetaVelvet is a single-genome and de Bruijn-graph based assembler Velvet modified and extended for de novo metagenome assembly. The fundament
  3 KB (326 words) - 19:28, 18 August 2022
• Platanus
  |{{#vardefine:url|http://platanus.bio.titech.ac.jp/platanus-assembler}} Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of
  3 KB (318 words) - 21:23, 6 December 2019
• Meraculous
  ...Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy of Illumina sequence by eschewing an
  3 KB (354 words) - 18:36, 10 June 2022
• KisSplice
  ...is around 5Gb for 100M reads. KisSplice is not a full-length transcriptome assembler. This means that it will output the variable regions of the transcripts, no
  3 KB (359 words) - 19:33, 15 August 2022
• Shasta
  The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads Computational methods used by the Shasta assembler include:
  3 KB (402 words) - 21:24, 6 December 2019
• Velvet
  Sequence assembler for very short reads. Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa o
  4 KB (523 words) - 17:06, 14 December 2022
• Pandaseq
  PANDASEQ is a PAired-eND Assembler for DNA sequences.
  2 KB (239 words) - 18:08, 19 August 2022
• W2rap-contigger
  An Illumina PE genome contig assembler
  2 KB (246 words) - 21:29, 6 December 2019
• Meryl
  ...ear total rewrite of 'meryl' that appeared in both project kmer and Celera Assembler.
  2 KB (254 words) - 22:26, 8 September 2020
• GapCloser
  emerging during the scaffolding process by SOAPdenovo or other assembler,
  2 KB (264 words) - 16:52, 15 August 2022
• Pbipa
  Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was des
  2 KB (268 words) - 21:58, 27 April 2022
• SPAdes
  St. Petersburg genome assembler
  2 KB (280 words) - 15:47, 22 August 2022

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