Pbsv
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Description
pbsv is a suite of tools to call and analyze structural variants in diploid genomes from PacBio single molecule real-time sequencing (SMRT) reads. The tools power the Structural Variant Calling analysis workflow in PacBio's SMRT Link GUI.
pbsv calls insertions, deletions, inversions, duplications, and translocations. Both single-sample calling and joint (multi-sample) calling are provided. pbsv is most effective for:
- insertions 20 bp to 10 kb
- deletions 20 bp to 100 kb
- inversions 200 bp to 10 kb
- duplications 20 bp to 10 kb
- translocations between different chromosomes or further than 100kb apart on a single chromosome
Environment Modules
Run module spider pbsv to find out what environment modules are available for this application.
System Variables
- HPC_PBSV_DIR - installation directory
- HPC_PBSV_BIN - executable directory