Oatk
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Description
Oatk (Organellar Annotation Toolkit) is a bioinformatics toolkit designed for plant organelle genome analysis. It supports genome assembly and annotation processes for mitochondria and plastid genomes, facilitating data analysis with tools like `nhmmscan` from HMMER.
Environment Modules
Run module spider oatk to find out what environment modules are available for this application.
To run Oatk, ensure the following dependencies are loaded: - HMMER (for `nhmmscan`)
Run module load hmmer
Run module load oatk
System Variables
- HPC_OATK_DIR - installation directory
- HPC_OATK_BIN - executable directory