Ncbi-fcs
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Description
Foreign Contamination Screening caller scripts and documentation.
Environment Modules
Run module spider ncbi-fcs to find out what environment modules are available for this application.
System Variables
- HPC_NCBI-FCS_DIR - installation directory
- HPC_NCBI-FCS_BIN - executable directory
- GXDB_LOC - database directory
Additional Information
- unset PYTHONHOME after loading the ncbi-fcs module
- request at least 512 GiB memory to hold the database and accessory files.
- copy the full "gxdb" database to the slurm $TMPDIR
- set $GXDB_LOC environmental variable to point to $TMPDIR
cp -r "$GXDB_LOC/gxdb" $TMPDIR/gxdb export GXDB_LOC=$TMPDIR