Darwin-gpu
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Description
GPU accelerated version of Darwin, a DNA alignment algorithm.
Environment Modules
Run module spider darwin-gpu to find out what environment modules are available for this application.
System Variables
- HPC_DARWIN-GPU_DIR - installation directory
- HPC_DARWIN-GPU_BIN - executable directory
Additional Information
Application must be run from a copy of the installation directory because dependencies are hard-coded to be relative the compiled binary (darwin).
$ cp -r $HPC_DARWINGPU_DIR /blue/$GROUP/$USER/mydarwin-gpu $ cd /blue/$GROUP/$USER/mydarwin-gpu $ darwin -h Usage: ./reference_guided <REFERENCE>.fasta <READS>.fasta [NUM_BLOCKS THREADS_PER_BLOCK]