Clairs
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Description
ClairS is a somatic variant caller designed for paired samples and primarily ONT long-read. It uses Clair3 to eliminate germline variants. It ensembles the pileup and full-alignment models in Clair3, trusts them equally, and decides on the result using a set of rules and post-processing filters.
ClairS means Clair-Somatic, or the masculine plural of "Clair" in french (thus, 's' is silent).
Environment Modules
Run module spider ClairS to find out what environment modules are available for this application.
System Variables
- HPC_CLAIRS_DIR - installation directory