Clair3
Jump to navigation
Jump to search
Description
Clair3 is a germline small variant caller for long-reads. Clair3 makes the best of two major method categories: pileup calling handles most variant candidates with speed, and full-alignment tackles complicated candidates to maximize precision and recall. Clair3 runs fast and has superior performance, especially at lower coverage. Clair3 is simple and modular for easy deployment and integration.
Clair3 is the 3rd generation of Clair (the 2nd) and Clairvoyante (the 1st).
Environment Modules
Run module spider Clair3 to find out what environment modules are available for this application.
System Variables
- HPC_CLAIR3_DIR - installation directory