Difference between revisions of "WHAMM"

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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|whamm}} |{{#vardefine:url|http://coruscant.itmat.upenn.edu/whamm/dlnotes.html`}} <!--CONFIGURATION: OP...")
 
 
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[[Category:Software]]
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[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|whamm}}
 
|{{#vardefine:app|whamm}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - exectuable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - exectuable directory
  
 
<!--Configuration-->
 
<!--Configuration-->

Latest revision as of 17:42, 22 August 2022

Description

whamm website  

WHAMM is available for free download, though the current version is considered "alpha" with a formal publication currently in progress. As such, be aware that there will be bugs, revisions, and general changes that may happen between now and the time that a version is finalized for publication (and even then, revisions and bug fixed will continue).

Environment Modules

Run module spider whamm to find out what environment modules are available for this application.

System Variables

  • HPC_WHAMM_DIR - installation directory
  • HPC_WHAMM_BIN - exectuable directory