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vt website  

vt is a variant tool set that discovers short variants from Next Generation Sequencing data.

Environment Modules

Run module spider vt to find out what environment modules are available for this application.

System Variables

  • HPC_VT_DIR - installation directory
  • HPC_VT_BIN - executable directory


If you publish research that uses vt you have to cite it as follows:

Adrian Tan, Gonçalo R. Abecasis and Hyun Min Kang. Unified Representation of Genetic Variants. Bioinformatics (2015) 31(13): 2202-2204