Difference between revisions of "Velocyto"

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[[Category:biology]][[Category:sequencing]]
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[[Category:software]][[Category:biology]][[Category:sequencing]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|velocyto}}
 
|{{#vardefine:app|velocyto}}

Latest revision as of 00:33, 25 May 2023

Description

velocyto website  

Velocyto is a library for the analysis of RNA velocity.

Velocyto includes a command line tool and an analysis pipeline

Environment Modules

Run module spider velocyto to find out what environment modules are available for this application.

System Variables

  • HPC_VELOCYTO_DIR - installation directory
  • HPC_VELOCYTO_BIN - executable directory




Citation

If you publish research that uses velocyto you have to cite it as follows:

If you use velocyto please cite the bioarxiv preprint RNA velocity in single cells. (Note from velocyto website)