Difference between revisions of "Vcfanno"
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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|vcfanno}} |{{#vardefine:url|https://github.com/brentp/vcfanno}} <!--CONFIGURATION: OPTIONAL (|1}} mean...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|vcfanno}} | |{{#vardefine:app|vcfanno}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:29, 6 December 2019
Description
vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
Environment Modules
Run module spider vcfanno to find out what environment modules are available for this application.
System Variables
- HPC_VCFANNO_DIR - installation directory
- HPC_VCFANNO_BIN - executable directory