Difference between revisions of "Varnorm"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|varnorm}} |{{#vardefine:url|https://github.com/weiyi-bit...") |
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|{{#vardefine:app|varnorm}} | |{{#vardefine:app|varnorm}} | ||
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| − | == | + | ==Environment Modules== |
| + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
| + | ==System Variables== | ||
| + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 17:23, 22 August 2022
Description
Normalize variants in VCF file using left-aligned normalization. Basically a wrapper around Counsyl's hgvs package.
Environment Modules
Run module spider varnorm to find out what environment modules are available for this application.
System Variables
- HPC_VARNORM_DIR - installation directory
- HPC_VARNORM_BIN - executable directory