Difference between revisions of "Varnorm"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:29, 6 December 2019
Description
Normalize variants in VCF file using left-aligned normalization. Basically a wrapper around Counsyl's hgvs package.
Required Modules
Serial
- gcc/5.2.0
- varnorm
System Variables
- HPC_VARNORM_DIR - installation directory
- HPC_VARNORM_BIN - executable directory