Difference between revisions of "V-pipe"

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[[Category:Biology]]
 
[[Category:Biology]]
 
[[Category:Genomics]]
 
[[Category:Genomics]]
[[Category:Workflow Automation]]
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[[Category:Sequencing]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|v-pipe}}
 
|{{#vardefine:app|v-pipe}}

Latest revision as of 17:20, 22 August 2022

Description

v-pipe website  

V-pipe is a workflow designed for analysis of next generation sequencing (NGS) data from viral pathogens. It produces a number of results in a curated format.

Environment Modules

Run module spider v-pipe to find out what environment modules are available for this application.

System Variables

  • HPC_V-PIPE_DIR - installation directory
  • HPC_V-PIPE_BIN - executable directory




Citation

If you publish research that uses v-pipe you have to cite it as follows:

Posada-Céspedes S., Seifert D., Topolsky I., Jablonski K., Metzner K.J., and Beerenwinkel N. 2021. "V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data." Bioinformatics, January. doi:10.1093/bioinformatics/btab015.