Difference between revisions of "UMICollapse"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|UMICollapse }} |{{#vardefine:url|https://github.com/Daniel-Liu-c0deb0t/UMICollapse}} <!--CONFIGURATION...")
 
m (Israel.herrera moved page UmiCollapse to UMICollapse without leaving a redirect)
 
(One intermediate revision by the same user not shown)
(No difference)

Latest revision as of 15:53, 16 November 2022

Description

UMICollapse website  

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI)

Environment Modules

Run module spider UMICollapse to find out what environment modules are available for this application.

System Variables

  • HPC_UMICOLLAPSE_DIR - installation directory
  • HPC_UMICOLLAPSE_BIN - executable directory




Citation

If you publish research that uses UMICollapse you have to cite it as follows:

liu2019algorithms, Algorithms for efficiently collapsing reads with Unique Molecular Identifiers, Liu, Daniel, bioRxiv, 2019, Cold Spring Harbor Laboratory