Difference between revisions of "Tuxedo"

From UFRC
Jump to navigation Jump to search
 
(5 intermediate revisions by one other user not shown)
Line 1: Line 1:
 +
__NOTOC__
 +
[[Category:Software]][[Category:Bioinformatics]]
 
Tuxedo is a combination of three different programs:
 
Tuxedo is a combination of three different programs:
  
* bowtie ([http://bowtie-bio.sourceforge.net/index.shtml Bowtie Website])
+
* [[Bowtie]] - [http://bowtie-bio.sourceforge.net/index.shtml Bowtie Website]
* tophat ([http://tophat.cbcb.umd.edu/ Tophat Website])
+
* [[Bowtie2]] - [http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie Website]
* cufflinks ([http://cufflinks.cbcb.umd.edu/ Cufflinks Website])
+
* [[Tophat]] - [http://tophat.cbcb.umd.edu/ Tophat Website]
 +
* [[Cufflinks]] - [http://cufflinks.cbcb.umd.edu/ Cufflinks Website]
  
==Installation Location==
+
See the respective program page for usage information or run
 +
module spider program
 +
where ''program'' is bowtie, bowtie2, tophat, or cufflinks.
  
These programs are all installed here:
+
See individual software wiki pages for more details.
 
+
=Validation=
/apps/tuxedo/bowtie
+
* Validated 4/5/2018
/apps/tuxedo/tophat
 
/apps/tuxedo/cufflinks
 
==Libraries==
 
 
 
Samtools also needs to be installed on the system for tophat to work. They are currently installed here:
 
 
 
/apps/tuxedo/samtools-0.1.16
 

Latest revision as of 18:52, 5 April 2018

Tuxedo is a combination of three different programs:

See the respective program page for usage information or run

module spider program

where program is bowtie, bowtie2, tophat, or cufflinks.

See individual software wiki pages for more details.

Validation

  • Validated 4/5/2018