Difference between revisions of "TrimAl"

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[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequence Alignment]]
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[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Alignment‏]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|trimal}}
 
|{{#vardefine:app|trimal}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 19:32, 24 August 2022

Description

trimal website  

trimAl is a tool for the automated removal of spurious sequences or poorly aligned regions from a multiple sequence alignment.

Environment Modules

Run module spider trimal to find out what environment modules are available for this application.

System Variables

  • HPC_TRIMAL_DIR - installation directory




Citation

If you publish research that uses trimal you have to cite it as follows:

Salvador Capella-Gutierrez; Jose M. Silla-Martinez; Toni Gabaldon. Bioinformatics 2009 25: 1972-1973.