Trgt
Revision as of 14:45, 28 July 2023 by Sohaibuddinsyed (talk | contribs) (Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|trgt}} |{{#vardefine:url|https://github.com/PacificBiosciences/trgt}} <!--CONFIGURATION: OPTIONAL (|1}...")
Description
TRGT is a tool for targeted genotyping of tandem repeats from PacBio HiFi data. In addition to the basic size genotyping, TRGT profiles sequence composition, mosaicism, and CpG methylation of each analyzed repeat. TRGT comes with a companion tool TRVZ for visualization of reads overlapping the repeats.
Environment Modules
Run module spider trgt to find out what environment modules are available for this application.
System Variables
- HPC_TRGT_DIR - installation directory