Tophat

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Description

tophat website  

TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.

Tophat is a part of the Tuxedo suite.


Available Versions

  • 1.3.0.
  • 1.3.3 beta.
  • 1.4.1 (default).

Required Modules

modules documentation

Serial

  • tophat
  • HPC_TOPHAT_BIN - executable directory
  • HPC_TOPHAT_DOC - documents directory