Tcoffee

From UFRC
Revision as of 20:46, 12 August 2022 by Israel.herrera (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

tcoffee website  

T-Coffee is a multiple sequence alignment package. You can use T-Coffee to align sequences or to combine the output of your favorite alignment methods (Clustal, Mafft, Probcons, Muscle...) into one unique alignment (M-Coffee).

Environment Modules

Run module spider tcoffee to find out what environment modules are available for this application.

System Variables

  • HPC_TCOFFEE_DIR - installation directory
  • HPC_TCOFFEE_BIN - executable directory




Citation

If you publish research that uses tcoffee you have to cite it as follows:

T-Coffee: A novel method for multiple sequence alignments. Notredame,Higgins,Heringa,JMB,302(205-217), 2000