Difference between revisions of "Taxtastic"

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(Created page with "Category:SoftwareCategory:biologyCategory:taxonomy {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|taxtastic}} |{{#vardefine:url|https://github.com/fhcrc/taxtas...")
 
 
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[[Category:Software]][[Category:biology]][[Category:taxonomy]]
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[[Category:Software]][[Category:biology]][[Category:Genomics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|taxtastic}}
 
|{{#vardefine:app|taxtastic}}
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 15:45, 19 August 2022

Description

taxtastic website  

Taxtastic is a python package used to build and maintain reference packages-- i.e. collections of reference trees, reference alignments, profiles, and associated taxonomic information.

Environment Modules

Run module spider taxtastic to find out what environment modules are available for this application.

System Variables

  • HPC_TAXTASTIC_DIR - installation directory
  • HPC_TAXTASTIC_BIN - executable directory