Difference between revisions of "TaxMaps"
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(Created page with "Category:SoftwareCategory:biologyCategory:phylogeneticsCategory:taxonomy {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|taxmaps}} |{{#vardefine:url|https:/...") |
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| − | [[Category:Software]][[Category:biology]][[Category:phylogenetics]][[Category: | + | [[Category:Software]][[Category:biology]][[Category:phylogenetics]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|taxmaps}} | |{{#vardefine:app|taxmaps}} | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
* TAXMAPS_DB - database directory | * TAXMAPS_DB - database directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 15:45, 19 August 2022
Description
taxMaps is an ultra-efficient, customizable and fully scalable taxonomic classification tool for short-read data designed to deal with large DNA/RNA metagenomics samples. Its performance and comprehensiveness makes it highly suitable for unbiased contamination detection in large-scale sequencing operations, microbiome studies comprising a large number of samples, and for applications where the analysis delivery time is a critical factor, such as pathogen identification from clinical or environmental samples.
Environment Modules
Run module spider taxmaps to find out what environment modules are available for this application.
System Variables
- HPC_TAXMAPS_DIR - installation directory
- HPC_TAXMAPS_BIN - executable directory
- HPC_TAXMAPS_DOC - documentation directory
- TAXMAPS_DB - database directory