TGI Clustering tools (TGICL): a software system for fast clustering of large EST datasets
This package automates clustering and assembly of a large EST/mRNA dataset. The clustering is performed by a slightly modified version of NCBI's megablast , and the resulting clusters are then assembled using CAP3 assembly program. TGICL starts with a large multi-FASTA file (and an optional peer quality values file) and outputs the assembly files as produced by CAP3
module spider tgicl to find out what environment modules are available for this application.
- HPC_TGICL_DIR - installation directory
- HPC_TGICL_BIN - executable directory
- HPC_TGICL_CONF - conf directory
- To copy the default skeleton configuration file to the working directory:
cp $HPC_TGICL_CONF/tgicl.cfg .
- Sample run
launch_tgicl tgicl -F sample.fasta -q sample.qual -c 4