Difference between revisions of "StringMLST"
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Revision as of 13:49, 6 June 2022
Description
Fast k-mer based tool for multi locus sequence typing (MLST) stringMLST is a tool for detecting the MLST of an isolate directly from the genome sequencing reads. stringMLST predicts the ST of an isolate in a completely assembly and alignment free manner. The tool is designed in a light-weight, platform-independent fashion with minimum dependencies.
Required Modules
Serial
- gcc/5.2.0
- stringmlst
System Variables
- HPC_STRINGMLST_DIR - installation directory
- HPC_STRINGMLST_BIN - executable directory