Difference between revisions of "StringMLST"

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[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]
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[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|stringmlst}}
 
|{{#vardefine:app|stringmlst}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Latest revision as of 20:45, 12 August 2022

Description

stringmlst website  

Fast k-mer based tool for multi locus sequence typing (MLST) stringMLST is a tool for detecting the MLST of an isolate directly from the genome sequencing reads. stringMLST predicts the ST of an isolate in a completely assembly and alignment free manner. The tool is designed in a light-weight, platform-independent fashion with minimum dependencies.

Environment Modules

Run module spider stringmlst to find out what environment modules are available for this application.

System Variables

  • HPC_STRINGMLST_DIR - installation directory
  • HPC_STRINGMLST_BIN - executable directory