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srst2 website  

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Environment Modules

Run module spider srst2 to find out what environment modules are available for this application.

System Variables

  • HPC_SRST2_DIR - installation directory


If you publish research that uses srst2 you have to cite it as follows:

The peer-reviewed open-access paper is available in Genome Medicine: