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==Launch Wrapper== Use the MATLAB launch wrapper provided by UFRC to start your MATLAB GUI session:

|{{#vardefine:url|https://fracpete.github.io/python-weka-wrapper/}} python-weka-wrapper provides a thin wrapper around the basic (non-GUI) functionality of Weka (some plots are available

| mac2unix || a wrapper of dos2unix preset for conversion from macos to linux text file line ending | unix2dos || a wrapper of dos2unix preset for conversion from linux to windows text file line endi

We provide a wrapper script GenomeAnalysisTK for gatk module versions before 4.0 that is equival If you do not use the wrapper you '''must''' make sure to create and use a local ''TMPDIR'' in your /blue

Normalize variants in VCF file using left-aligned normalization. Basically a wrapper around Counsyl's hgvs package.

It is a cython wrapper for htslib developed in the Quinlan lab.

ImageJ can be run via the ''imagej'' wrapper script.

...gram for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools.

...and semantics as Perl 5. PCRE has its own native API, as well as a set of wrapper functions that correspond to the POSIX regular expression API. The PCRE lib

...hainer. OrthoMCL, Orthofinder and DAGchainer are bundled with Synima, with wrapper scripts provided in /util/. Several scripts launch several jobs that can be

pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and outpu

...icient system, with assumptions and multiple solve() calls. A C compatible wrapper is also provided. The python interface provides a high-level yet efficient

title={SciANN: A Keras/TensorFlow wrapper for scientific computations and physics-informed deep learning using artifi

...a Singularity container. To run any executable use the 'launch_freesurfer' wrapper after loading the module.

A wrapper program to parallelize the runs of Structure, fastStructure, MavericK and A

A wrapper script -- '<code>orthomcl_wrapper_SQLITE</code>' -- that creates a suitable The wrapper script writes a '<code>run_split_blast_array.sh</code>' script that can be

...ls. To run Tecplot under Xpra use the tecplot module and tecplot_gui shell wrapper. Example session with the default resource request:

...ferred method of using Finesse is from Jupyter notebooks, using its Python wrapper Pykat.

This script serves as an interactive bash wrapper to QC, assemble, map, and call SNPs from double digest RAD data. It is desi

or use the wrapper script we provide as

Wrapper shell scripts for the following applications are available, so they can be

...yses can be performed via the CARD website RGI portal, via use of a Galaxy wrapper for the Galaxy platform, or alternatively you can Install RGI from Conda or

...e NCSC/CMAS's EDSS project and EPA's Models-3. There is a external-package wrapper for the I/O API in the Weather Research and Forecasting Model [WRF], which

MetaWRAP aims to be an easy-to-use metagenomic wrapper suite that accomplishes the core tasks of metagenomic analysis from start t

...u decide to use the MPI version of Garli, use the <code>mpiexec</code> MPI wrapper to run it. For example,

UFRC provides a wrapper script for executing the SLAW workflow inside of its container. As such, y

Caper (Cromwell Assisted Pipeline ExecutoR) is a wrapper Python package for Cromwell and a dependency of the [https://github.com/ENC

Faircloth, BC. 2013. illumiprocessor: a trimmomatic wrapper for parallel

The PGAP module provides a wrapper function ("pgap.py") to fine tune usage in HPG. This means that you should

We provide an '<code>astral</code>' wrapper script, so java -jar ... doesn't have to be called manually. An example com

"A Learning-Based Wrapper Method to Correct Systematic Errors in Automatic Image Segmentation:

...ngle-end and paired-end reads respectively or the <code>trimmomatic</code> wrapper for trimmomatic/0.32 or later. For example,

Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control,

HiPerGator provides a "wrapper" to call the underlying container image. An example of the proper way to c

...plugin package. We have a copy installed and provided by the sra module. A wrapper script ''ascp.sh'' that automatically uses the ssh key is available. For in

..., custom references, etc. are located. To aid with this, UFRC provides a "wrapper script" for each application in the pipeline that can be called with a path

For snpeff/3.3h we provided a 'snpeff' wrapper that made running snpeff easier. For example,

the alphafold_full_db.sh wrapper script has been created to mimic the behavior of docker/run_docker.py as re

The ''srundev'' command is a wrapper encapsulating ''srun --partition=hpg-dev --pty bash -i''.

Starting with picard/1.137 there is a convenient shell wrapper '<code>picard</code>', so you can use the following command:

Use the b2g4pipe wrapper, which is equivalent to