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ChartDirector
VBScript, VBA, JavaScript, .NET (C#/VB), Java, JSP, C++, PHP, Perl, Python,

3 KB (397 words) - 13:26, 15 August 2022
USEARCH
Edgar, Robert C. - Search and clustering orders of magnitude faster than BLAST Author : Edgar, Robert C.

4 KB (559 words) - 17:19, 22 August 2022
PICSL
[1] H. Wang, J. W. Suh, S. Das, J. Pluta, C. Craige, P. Yushkevich, "Multi-atlas segmentation [2] H. Wang, S. R. Das, J. W. Suh, M. Altinay, J. Pluta, C. Craige, B. B. Avants, and P. A. Yushkevich,

3 KB (390 words) - 20:31, 24 August 2022
SLURM Environmental Variables
...Number of cores per task. I.e., the value given to the -cpus-per-task or -c sbatch options. Not set unless one of those options given.

1 KB (236 words) - 17:43, 5 March 2024
CASM
[ref2] J. C. Thomas, A. Van der Ven, Finite-temperature properties of strongly anharmon [ref4] A. Van der Ven, J. C. Thomas, Q. Xu, J. Bhattacharya “Linking the electronic structure of soli

4 KB (453 words) - 13:20, 15 August 2022
EDTA
...J., Lugo C. S. B., Elliott T. A., Ware D., Peterson T., Jiang N.✉, Hirsch C. N.✉ and Hufford M. B.✉ (2019). Benchmarking Transposable Element Annot

4 KB (474 words) - 21:27, 14 September 2023
LAMMPS
...liquid, solid, or gaseous state. It is a open source software, written in C++ and developed at Sandia laboratory. It can be used to model atomic, polym ...CMAKE_INSTALL_PREFIX=<target_lammps_dir> -C ../cmake/presets/all_on.cmake -C ../cmake/presets/nolib.cmake ../cmake

5 KB (731 words) - 20:30, 6 April 2024
Account and QOS limits under SLURM
#Looks good, let's terminate the request with Ctrl+C> ^C

8 KB (1,354 words) - 18:36, 9 February 2024
AMBER
...Cheatham, III, T. Darden, H. Gohlke, R. Luo, K.M. Merz, Jr., A. Onufriev, C. Simmerling, B. Wang and R. Woods. The Amber biomolecular simulation progra ...-J. Hsieh, G. Cui, D.R. Roe, D.H. Mathews, M.G. Seetin, R. Salomon-Ferrer, C. Sagui, V. Babin, T. Luchko, S. Gusarov, A. Kovalenko, and P.A. Kollman (20

5 KB (736 words) - 20:09, 5 February 2024
Tensorboard
...orBoard 2.4.0 at '''<nowiki>http://localhost:6006/</nowiki>''' (Press CTRL-C to quit)

2 KB (231 words) - 21:03, 12 December 2023
CUDA Examples
===cuda_bm.c=== {{#fileAnchor: cuda_bm.c}}

12 KB (1,540 words) - 17:09, 21 December 2022
Rclone
c) Copy remote e/n/d/r/c/s/q> n

6 KB (763 words) - 20:07, 30 October 2023
Persistent Terminal Sessions
...eate as many terminal windows in the screen session as needed with 'Ctrl+a c' key combination. See [[Screen]] documentation. Ctrl+a c

4 KB (719 words) - 13:36, 2 January 2023
FFTW
Fastest Fourier Transform in the West, is a C library for computing the Discrete Fourier Transform (DFT) in one or more d

2 KB (223 words) - 16:41, 15 August 2022
Mach2VCF
Mach2VCF is a C++ tool to convert MaCH files to VCF files.

2 KB (242 words) - 14:49, 10 June 2022
Vcf-validator
Validation suite for Variant Call Format (VCF) files, implemented using C++11

2 KB (249 words) - 17:27, 22 August 2022
DosageConvertor
DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3 to ther format

2 KB (252 words) - 15:04, 10 June 2022
OpenSim
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

2 KB (247 words) - 17:57, 19 August 2022
OpenSlide
OpenSlide is a C library that provides a simple interface to read whole-slide images

2 KB (248 words) - 21:22, 6 December 2019
CellProfiler
...arch Computing. To run CellProfiler in batch mode, you should include the -c or --run-headless option. Also, you want to use CELLPROFILER_USE_XVFB="1" -c, --run-headless Run headless (without the GUI)

8 KB (910 words) - 21:29, 21 December 2022
Tbb
Widely used C++ template library for task parallelism.

2 KB (259 words) - 21:29, 6 December 2019
Talesf
TALESF is a C library for identifying potential binding sites for transcription activator

2 KB (256 words) - 21:29, 6 December 2019
Fastp
...e fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.

2 KB (256 words) - 15:23, 15 August 2022
Glog
C++ implementation of the Google logging module

2 KB (269 words) - 17:10, 15 August 2022
Unanimity
C++ library and its applications to generate and process accurate consensus s

2 KB (268 words) - 17:48, 15 August 2022
GenomeTools
...nome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules.

2 KB (266 words) - 18:58, 12 August 2022
LEMON
Networks. It is a C++ template library providing efficient implementations

2 KB (268 words) - 15:41, 6 June 2022
Aster
...family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL).

2 KB (267 words) - 17:50, 28 August 2023
Libunistring
...t provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.

2 KB (269 words) - 15:49, 10 June 2022
IGoR
IGoR is a C++ software designed to infer V(D)J recombination related processes from seq

2 KB (271 words) - 13:52, 14 May 2020
Eagle-rc
...s.biomedcentral.com/articles/10.1186/s12920-018-0342-1 Tony Kuo and Martin C Frith and Jun Sese and Paul Horton. EAGLE: Explicit Alternative Genome Like

2 KB (270 words) - 22:30, 26 August 2020
QT
QT is a cross-platform application and UI framework for developers using C++ or QML, a CSS & JavaScript like language.

2 KB (257 words) - 20:57, 21 August 2022
MetaSV
...oup.com/bioinformatics/article/31/16/2741/321286 Marghoob Mohiyuddin, John C. Mu, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. W

2 KB (277 words) - 21:21, 6 December 2019
IMa2p
IMa2p is a parallel implementation of IMa2, using OpenMPI-C++ - a Bayesian MCMC based method for inferring population demography under

2 KB (277 words) - 21:21, 6 December 2019
Phylonet
C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzi

2 KB (263 words) - 21:23, 6 December 2019
GLPK
...(MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.

2 KB (272 words) - 17:11, 15 August 2022
QD
...ead-safe, but, unlike MPFUN2020, is available with both a Fortran-90 and a C++ high-level interface.

2 KB (271 words) - 17:47, 15 August 2022
Deepsig
Savojardo C., Martelli P.L., Fariselli P., Casadio R. DeepSig: deep learning improves s

2 KB (266 words) - 04:24, 6 December 2022
NetCDF-C
|{{#vardefine:app|netcdf-c}}

2 KB (278 words) - 14:47, 19 August 2022
MiRanda
...finding genomic targets for microRNAs. This algorithm has been written in C and is available as an open-source method under the GPL. MiRanda was develo

2 KB (278 words) - 21:21, 6 December 2019
Rust
...both functional and imperative paradigms. Rust is syntactically similar to C++, but its designers intend it to provide better memory safety while still

2 KB (285 words) - 21:24, 6 December 2019
Grib api
The ECMWF GRIB API is an application program interface accessible from C,

2 KB (278 words) - 17:22, 15 August 2022
FastSpar
FastSpar is a c++ implementation of the SparCC algorithm published here: Friedman, J. & Alm

2 KB (283 words) - 15:26, 15 August 2022
AEGeAn
...ble programs as well as several data structures and modules callable via a C API.

2 KB (287 words) - 16:31, 10 June 2022
SNeP
SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories esti

2 KB (278 words) - 16:23, 10 June 2022
UDUNITS
1) a C library for units of physical quantities.

2 KB (279 words) - 17:17, 22 August 2022
RMATS turbo
rMATS turbo is the C/Cython version of rMATS (refer to http://rnaseq-mats.sourceforge.net). The

2 KB (289 words) - 19:26, 2 June 2022
Gflags
The gflags package contains a C++ library that implements commandline flags processing. It includes built-i

2 KB (291 words) - 17:07, 15 August 2022
RMATS-turbo
rMATS turbo is the C/Cython version of rMATS (refer

2 KB (292 words) - 18:14, 8 March 2022
CGAL
and reliable geometric algorithms in the form of a C++ library.The Computational

2 KB (293 words) - 15:32, 6 June 2022

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