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  • User:Achander
    User Support and Services Team, Research Computing Facilitator UFIT Research Computing
    160 bytes (19 words) - 17:22, 16 September 2023
  • User:Cabreraruizdiazj
    Research Computing Facilitator UFIT Research Computing
    240 bytes (37 words) - 15:44, 18 January 2024
  • User:Moskalenko
    :User Support and Services Team Manager, Research Computing Facilitator, Biocomputing Specialist :UFIT Research Computing
    295 bytes (41 words) - 14:21, 19 May 2023
  • Mailing Lists
    The UF Research Computing maintains the following public mailing lists: ....ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HPC announcement list]. All Research Computing users are automatically subscribed to this list, so they receive announceme
    778 bytes (110 words) - 20:34, 2 August 2021
  • Gaussian License
    In order to use Gaussian at the Research Computing, users must fill out and sign a license agreement first. The license may be signed by contacting the Research Computing, and we can setup an appointment for you to come in and sign the appropriat
    1 KB (185 words) - 14:26, 30 June 2017
  • Project:General disclaimer
    See the Research Computing [http://www.rc.ufl.edu/about/policies/ Policies] for details.
    88 bytes (14 words) - 18:12, 21 June 2017
  • File:RC Billing Request Form.pdf
    UF Research Computing Billing Request For for new investments.
    (53 KB) - 23:16, 30 June 2016
  • Non Batch-System Resources
    ==UF Research Computing Non-Batch System Resources==
    569 bytes (90 words) - 20:04, 2 August 2021
  • Project:Privacy policy
    All UF Research Computing Websites follow the [http://privacy.ufl.edu/privacystatement.html Universit
    130 bytes (18 words) - 14:39, 30 March 2023
  • User:Jstrds
    Research Computing Facilitator Linux Research Support
    739 bytes (103 words) - 17:00, 4 October 2017
  • Category:Biology
    [[Category:Research]][[Category:Software]] Biological Computing Category in the UF HPC Wiki
    985 members (9 subcategories, 0 files) - 17:21, 3 June 2022
  • Help:Contents
    To ask for UF Research Computing Help please go to our [http://support.rc.ufl.edu Support System] website.
    374 bytes (71 words) - 02:32, 28 August 2014
  • User:Malex
    :UFIT Research Computing :Cancer Genetics Research Complex (CGRC), Rm. 119
    340 bytes (48 words) - 18:50, 7 July 2017
  • AI Examples
    The UFIT Research Computing AI Support Team maintains a suite of examples for computer vision and natur == Research Computing Github ==
    3 KB (367 words) - 18:50, 30 August 2022
  • Biology
    ...keep reading. We believe that the success of our support of the biological computing efforts at UF depends on the stability of the four main corner stones - har ...world renowned [http://wiki.g2.bx.psu.edu/ Galaxy] platform for biological computing at UFRC. Please read the UFRC Galaxy [[Galaxy|documentation]] or proceed di
    4 KB (665 words) - 21:23, 14 December 2022
  • Blocked Accounts
    * You receive an email from Research Computing stating you have violated a policy on the cluster. If you have not received an email from Research Computing, but cannot login, please allow up to 15 minutes for the account to be acce
    2 KB (337 words) - 21:37, 29 January 2024
  • MASSMINE
    MassMine is a research tool designed to simplify the collection and use of data from social media == Using MassMine on Research Computing ==
    4 KB (562 words) - 15:42, 14 December 2022
  • AI Reference Datasets
    ...searcher convenience, efficient use of filesystem space, and cost savings. Research groups do not have to use their Blue or Orange quota to host their own copi ...'''All reference datasets hosted on HiPerGator must comply with Research Computing's [[AI reference dataset hosting policy]]'''.
    2 KB (256 words) - 15:03, 28 September 2021
  • Software Development Policies
    ...rld, e.g. as part of PubApps, will a security review be required. Research Computing staff will need to be involved as well as Information Security Office.
    533 bytes (84 words) - 15:43, 19 August 2022
  • File System Quotas
    ...illing the filesystem, which could result in job failures for all Research Computing users. Log in to your Research Computing account using SSH and use the blue_quota or orange_quota command to see the
    3 KB (428 words) - 18:50, 15 February 2021
  • 4p
    4P (Parallel Processing of Polymorphism Panels) is a software for computing If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (285 words) - 20:36, 11 August 2022
  • Get Help
    {{Note|There is no direct support for students using Research Computing resources for class work. See the [https://www.rc.ufl.edu/get-support/class If you are a UFIT Research Computing client using HiPerGator and related infrastructure sometimes you may not be
    5 KB (801 words) - 13:21, 26 March 2024
  • GatorLink Affiliate Account
    ...unt created through the Sponsor's department a sponsor can ask UF Research Computing to request a UFRC affiliate GatorLink account for the external collaborator ##Name of Research Group or Project
    1 KB (177 words) - 18:41, 14 December 2018
  • OpenCL
    OpenCL™ (Open Computing Language) is a low-level API for heterogeneous computing that runs on GPUs. Using the OpenCL API, developers can launch compute kern If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (365 words) - 17:52, 19 August 2022
  • Data Science Platform
    ...des essential infrastructure, tools, and expertise to support data science research and accelerate impactful discoveries. All support requests and inqueries ar ...l computation, and large-scale optimization. TensorFlow also supports both research and production deployments.
    5 KB (669 words) - 17:22, 10 May 2024
  • Nvidia CUDA Toolkit
    ...elopers, scientists and researchers are finding broad-ranging uses for GPU computing with CUDA. If you publish research that uses {{#var:app}} you have to cite it as follows:
    4 KB (543 words) - 13:44, 20 November 2023
  • MKL
    Intel Math Kernel Library (Intel MKL) is a computing math library of highly optimized, extensively threaded math routines for ap ...ration with Microsoft Visual Studio*, Eclipse*, and XCode*. The Intel> MKL computing math library allows for full integration of the Intel Compatibility OpenMP*
    3 KB (378 words) - 19:14, 24 August 2022
  • Matlab add-ons
    Matlab add-ons are managed by the campus licensing group and not be Research Computing. Here's how to get the list of available add-ons.
    2 KB (206 words) - 14:11, 30 June 2017
  • Modules
    ...ing the ''modules'' system developed by Robert McLay at the Texas Advanced Computing Center [http://www.tacc.utexas.edu/home (TACC)] in order to ease the comple
    3 KB (428 words) - 18:21, 7 February 2023
  • Globus
    ...te, the University of Chicago and Argonne National Laboratory. UF Research Computing has deployed Globus as one mechanism to facilitate data transfer to and fro ...tions. One level defines a particular globus setup and is asociated with a computing resource such as a server, cluster, storage system, desktop, laptop, or oth
    11 KB (1,849 words) - 14:14, 31 January 2024
  • AI Education and Training
    ...tual content, our hope is to support learners who seek to begin applied AI research. ...es a variety of online education and training materials in AI, accelerated computing, and accelerated data science for developers, data science researchers, stu
    3 KB (463 words) - 21:43, 7 November 2022
  • JModelTest
    ...ing model-averaged tree topologies. jModelTest 2 includes High Performance Computing (HPC) capabilities and additional features like new strategies for tree opt ...The default is 8. Make sure your job script requests appropriate number of computing cores with the '#PBS -l nodes=1:ppn=X'.
    3 KB (431 words) - 19:27, 12 August 2022
  • Julia
    ...hnical computing, with syntax that is familiar to users of other technical computing environments. It provides a sophisticated compiler, distributed parallel ex If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (412 words) - 20:49, 21 October 2022
  • Training Videos
    === Introduction to Research Computing and HiPerGator=== ...or new users, this training provides a general overview of the UF Research Computing facilities and basic usage of HiPerGator. <br>
    13 KB (1,991 words) - 17:16, 15 February 2024
  • BEDTools
    ...BEDTools, one can develop sophisticated pipelines that answer complicated research questions by "streaming" several BEDTools together. The following are examp #Culling/refining/computing coverage for BAM alignments based on genome features.
    3 KB (485 words) - 12:48, 15 August 2022
  • TREEPUZZLE
    ...ethod to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence ali If you publish research that uses {{#var:app}} you have to cite it as follows:
    4 KB (450 words) - 19:31, 10 June 2022
  • Training
    Research Computing runs regular in-person training sessions throughout the year. These session In addition to the training sessions coordinated by UF Research Computing, we are aware of many training opportunities provided by other institutions
    3 KB (484 words) - 13:21, 10 January 2023
  • Healthcare and Life Sciences
    ...from past examples and make informed decisions in life sciences. Research Computing AI Support team will assist in developing and refining advanced models for ...ble genomics analysis software suite that leverages full-stack accelerated computing to process data in minutes. Compatible with all leading sequencing instrume
    4 KB (529 words) - 04:22, 10 May 2024
  • Getting Started
    Welcome to UF Research Computing! This page is intended to help new clients getting started on HiPerGator us ...Training]] course to familiarize themselves with using a supercomputer for research, save time, and avoid many beginner mistakes.
    4 KB (648 words) - 19:34, 22 April 2024
  • Galaxy
    ...benefits of the UF instance of Galaxy are access to the high-speed campus Research Network, use of large HPC cluster resources for running jobs, transparent u
    4 KB (562 words) - 18:05, 9 November 2022
  • INLA
    Description: Bayesian computing with INLA If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (236 words) - 12:20, 26 August 2022
  • ExaBayes
    ...ayes can handle is only limited by the combined main memory of your entire computing cluster. If you publish research that uses {{#var:app}} you have to cite it as follows:
    7 KB (886 words) - 21:12, 21 December 2022
  • FFTW
    Fastest Fourier Transform in the West, is a C library for computing the Discrete Fourier Transform (DFT) in one or more dimensions, of arbitrar If you publish research that uses {{#var:app}} you may want to cite it as follows:<br/><br/>
    2 KB (223 words) - 16:41, 15 August 2022
  • Vaspkit
    A user-friendly interface facilitating high-throughput computing and analysis using VASP code If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (239 words) - 19:51, 1 June 2022
  • Satsuma2
    ...rrelation based synteny aligner, (re)designed to make full use of parallel computing If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (243 words) - 18:10, 1 June 2022
  • Remote Support
    * There is no direct support for students using Research Computing resources for class work. See [https://www.rc.ufl.edu/get-support/classroom
    2 KB (370 words) - 14:31, 2 May 2024
  • QuartetScores
    Code for computing various support scores for internodes If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (258 words) - 14:50, 27 April 2020
  • RHash
    RHash is a console utility for computing and verifying hash sums of files. If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (249 words) - 21:49, 21 August 2022
  • Tivoli Backup
    ...h UF-IT's Tivoli backup group to provide backups of their data on Research Computing systems. ...overed from the Tivoli system, please submit a service request in Research Computing's ticketing system at [http://support.rc.ufl.edu http://support.rc.ufl.edu]
    7 KB (1,207 words) - 16:29, 10 January 2023
  • AMAS
    If you publish research that uses {{#var:app}} you have to cite it as follows: ...660/ Borowiec, M.L. 2016. AMAS: a fast tool for alignment manipulation and computing of summary statistics. PeerJ 4:e1660.]
    2 KB (250 words) - 12:38, 12 August 2022

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