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• ProDy
  ...ast and flexible ProDy API is for interactive usage as well as application development. ProDy also comes with several analysis applications and a graphical user i
  2 KB (294 words) - 19:38, 21 August 2022
• Mono
  ...buting community is helping position Mono to become the leading choice for development of cross platform applications.
  2 KB (289 words) - 17:41, 15 August 2022
• Plinkseq
  ...iation data. The specific focus is to provide a platform for analytic tool development for variation data from large-scale resequencing and genotyping projects, p
  2 KB (296 words) - 20:25, 12 August 2022
• Mopac
  ...rmochemistry models (e.g. AM1, PM3, PM6, PM7). MOPAC has been under active development since 1981, led by James J. P. Stewart.
  3 KB (292 words) - 15:05, 8 April 2024
• AtomMan
  ...s of atoms. The focus of the package is to facilitate the rapid design and development of simulations that are fully documented and easily adaptable to new potent
  3 KB (308 words) - 14:16, 22 September 2020
• Rosetta
  Further applications involve the development of vaccines, new materials,
  3 KB (302 words) - 20:37, 10 June 2022
• SpaceRanger
  ...ded (FFPE) and fresh-frozen tissues to discover novel insights into normal development, disease pathology, and clinical translational research.
  3 KB (305 words) - 18:57, 20 October 2021
• FreeBayes
  ...iduals with heterogeneous copy number. FreeBayes is currently under active development.
  2 KB (302 words) - 18:55, 12 August 2022
• Pascal
  ...dditionally, support for the Motorola 68k architecture is available in the development versions.
  3 KB (303 words) - 20:44, 15 August 2022
• Model Card Toolkit
  ...ne learning documents that provide context and transparency into a model's development and performance. Integrating the MCT into your ML pipeline enables the shar
  3 KB (333 words) - 15:31, 10 July 2023
• Silo
  the development of general purpose tools for processing scientific
  3 KB (356 words) - 17:28, 10 June 2022
• KMC
  ...y for 2.x branch (standalone API for older KMC version is not longer under development, so new version of API should be used even for databases produced by older
  3 KB (343 words) - 14:34, 4 September 2020
• AutoDock-GPU
  Jubilee Development.
  3 KB (332 words) - 15:25, 12 August 2022
• Spyder
  ...iting, analysis, debugging, and profiling functionality of a comprehensive development tool with the data exploration, interactive execution, deep inspection, and
  3 KB (350 words) - 18:56, 21 August 2022
• UCSC
  ...ast data formats; sequence alignment; motif searching; hidden Markov model development; and much more. Library subroutines are available for everything from manag
  3 KB (349 words) - 20:53, 12 August 2022
• Nipype
  software development in a high-level language and addressing limitations of
  3 KB (348 words) - 20:07, 12 August 2022
• Theano
  Theano Development Team. “Theano: A Python framework for fast computation of mathematical ex
  3 KB (345 words) - 15:58, 6 June 2022
• Slicer
  ...a desktop software used in medical and biomedical imaging. It serves as a development platform for quickly building custom solutions to imaging challenges. Suppo
  3 KB (346 words) - 15:42, 8 April 2024
• HyPhy
  ...4163875017617061&as_sdt=0%2C5&as_ylo=&as_vis=0 Google Scholar]). Continued development of HyPhy is currently supported in part by an NIGMS R01 award [http://proje
  3 KB (380 words) - 18:36, 15 August 2022
• Metilene
  ...le tool to study the effect of epigenetic modifications in differentiation/development, tumorigenesis, and systems biology on a global, genome-wide level. Whether
  3 KB (375 words) - 19:39, 18 August 2022

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