Search results

• Halla
  ...er, Emma Schwager,Jason Lloyd-Price, George Weingart, Yo Sup Moon, Xochitl C. Morgan, Levi Waldron, Eric A. Franzosa, Curtis Huttenhower. High-sensitivi
  3 KB (367 words) - 13:57, 25 March 2022
• Svtyper
  C Chiang, R M Layer, G G Faust, M R Lindberg, D B Rose, E P Garrison, G T Mar
  3 KB (360 words) - 14:04, 3 October 2022
• MEGAHIT
  [https://www.ncbi.nlm.nih.gov/pubmed/25609793 Li, D., Liu, C-M., Luo, R., Sadakane, K., and Lam, T-W., (2015) MEGAHIT: An ultra-fast sin
  3 KB (367 words) - 18:31, 18 August 2022
• ViennaRNA
  The ViennaRNA Package consists of a C code library and several stand-alone programs for the prediction and compar
  3 KB (396 words) - 19:08, 10 June 2022
• SHEsisPlus
  [1] Neigenfind J1, Gyetvai G, Basekow R, Diehl S, Achenbach U, Gebhardt C, Selbig J, Kersten B.Haplotype inference from unphased SNP data in heterozy
  3 KB (344 words) - 15:04, 19 August 2022
• FSL
  #M. Jenkinson, C.F. Beckmann, T.E. Behrens, M.W. Woolrich, S.M. Smith. FSL. NeuroImage, 62:7 #M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data
  3 KB (365 words) - 16:47, 17 January 2023
• VS Code Remote Development
  # Use ''''Ctrl-C'''' key combination to stop the <code>tunnel</code> process. ...on requesting 4 cores, 15GB of RAM, an A100 GPU for 1 hour: <code>'''srun -c 4 --mem 15gb -p gpu --gres gpu:a100:1 -t 60 --pty bash -i'''</code>
  7 KB (1,100 words) - 17:42, 5 March 2024
• Csubst
  '''CSUBST''' is a tool for analyzing '''C'''ombinatorial '''SUBST'''itutions of codon sequences in phylogenetic trees
  3 KB (380 words) - 22:12, 26 July 2023
• MCarts
  Zhang, C. †, Lee, K.-Y., Swanson, M.S., Darnell, R.B. † 2013. Prediction of clus
  3 KB (399 words) - 14:53, 14 December 2022
• Open3d
  ...exposes a set of carefully selected data structures and algorithms in both C++ and Python. The backend is highly optimized and is set up for paralleliza
  3 KB (414 words) - 17:16, 7 July 2023
• TRNAscan-Se
  ...orithm from A. Pavesi's group). It runs on any UNIX system with Perl and a C compiler installed.
  3 KB (389 words) - 20:53, 12 August 2022
• Pygenometracks
  * Hi-C matrices (as triangle or squares)
  3 KB (375 words) - 20:54, 18 May 2023
• Caper
  ...a dependency of the [https://github.com/ENCODE-DCC/hic-pipeline ENCODE Hi-C uniform processing pipeline]. Caper wraps Cromwell to run pipelines on mult
  3 KB (425 words) - 14:43, 11 October 2023
• ITK-SNAP
  ...h, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C. Gee, and Guido Gerig. User-guided 3D active contour segmentation of anatom
  3 KB (397 words) - 19:23, 12 August 2022
• Gblocks
  Gblocks is a computer program written in ANSI C language that eliminates
  3 KB (441 words) - 13:56, 13 June 2022
• Managing Python environments and Jupyter kernels
  mamba install cudatoolkit=11.3 pytorch=1.12.1=gpu_cuda* -c pytorch <code>mamba install pytorch torchvision torchaudio cudatoolkit=11.3 -c pytorch</code>
  9 KB (1,496 words) - 16:52, 30 April 2024
• Julia
  ...written in Julia itself, also integrates mature, best-of-breed open source C and Fortran libraries for linear algebra, random number generation, signal
  3 KB (412 words) - 20:49, 21 October 2022
• Artemis
  Carver T, Berriman M, Tivey A, Patel C, Böhme U et al.
  3 KB (378 words) - 14:53, 12 August 2022
• MMseqs2
  ...sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software
  3 KB (413 words) - 20:22, 2 October 2023
• VarSimLab
  Quit the server with CONTROL-C.
  3 KB (420 words) - 17:24, 22 August 2022

View (previous 20 | next 20) (20 | 50 | 100 | 250 | 500)