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• ECE
  Wrapper shell scripts for the following applications are available, so they can be
  3 KB (360 words) - 21:39, 3 March 2023
• RGI
  ...yses can be performed via the CARD website RGI portal, via use of a Galaxy wrapper for the Galaxy platform, or alternatively you can Install RGI from Conda or
  3 KB (352 words) - 21:24, 6 December 2019
• IOAPI
  ...e NCSC/CMAS's EDSS project and EPA's Models-3. There is a external-package wrapper for the I/O API in the Weather Research and Forecasting Model [WRF], which
  2 KB (341 words) - 19:35, 24 August 2022
• MetaWRAP
  MetaWRAP aims to be an easy-to-use metagenomic wrapper suite that accomplishes the core tasks of metagenomic analysis from start t
  3 KB (412 words) - 22:31, 8 September 2020
• GARLI
  ...u decide to use the MPI version of Garli, use the <code>mpiexec</code> MPI wrapper to run it. For example,
  3 KB (485 words) - 16:53, 15 August 2022
• SLAW
  UFRC provides a wrapper script for executing the SLAW workflow inside of its container. As such, y
  3 KB (389 words) - 23:49, 21 August 2022
• Caper
  Caper (Cromwell Assisted Pipeline ExecutoR) is a wrapper Python package for Cromwell and a dependency of the [https://github.com/ENC
  3 KB (425 words) - 14:43, 11 October 2023
• Illumiprocessor
  Faircloth, BC. 2013. illumiprocessor: a trimmomatic wrapper for parallel
  4 KB (452 words) - 18:44, 15 August 2022
• PGAP
  The PGAP module provides a wrapper function ("pgap.py") to fine tune usage in HPG. This means that you should
  3 KB (393 words) - 14:29, 6 July 2022
• ASTRAL
  We provide an '<code>astral</code>' wrapper script, so java -jar ... doesn't have to be called manually. An example com
  3 KB (415 words) - 15:08, 12 August 2022
• PICSL
  "A Learning-Based Wrapper Method to Correct Systematic Errors in Automatic Image Segmentation:
  3 KB (390 words) - 20:31, 24 August 2022
• Trimmomatic
  ...ngle-end and paired-end reads respectively or the <code>trimmomatic</code> wrapper for trimmomatic/0.32 or later. For example,
  4 KB (522 words) - 20:52, 12 August 2022
• Trim Galore
  Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control,
  4 KB (512 words) - 20:52, 12 August 2022
• Appreci8
  HiPerGator provides a "wrapper" to call the underlying container image. An example of the proper way to c
  4 KB (561 words) - 14:25, 12 August 2022
• SRA
  ...plugin package. We have a copy installed and provided by the sra module. A wrapper script ''ascp.sh'' that automatically uses the ssh key is available. For in
  4 KB (601 words) - 19:10, 27 November 2023
• VirSieve
  ..., custom references, etc. are located. To aid with this, UFRC provides a "wrapper script" for each application in the pipeline that can be called with a path
  5 KB (639 words) - 18:59, 14 December 2022
• SnpEff
  For snpeff/3.3h we provided a 'snpeff' wrapper that made running snpeff easier. For example,
  4 KB (562 words) - 15:19, 5 January 2023
• AlphaFold
  the alphafold_full_db.sh wrapper script has been created to mimic the behavior of docker/run_docker.py as re
  6 KB (832 words) - 15:38, 2 February 2024
• Development and Testing
  The ''srundev'' command is a wrapper encapsulating ''srun --partition=hpg-dev --pty bash -i''.
  5 KB (842 words) - 17:26, 8 March 2023
• Picard-tools
  Starting with picard/1.137 there is a convenient shell wrapper '<code>picard</code>', so you can use the following command:
  6 KB (882 words) - 15:25, 27 January 2023

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