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• Coreutils
  The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system.
  2 KB (301 words) - 14:09, 15 August 2022
• Fairseq
  ...custom models for translation, summarization, language modeling and other text generation tasks.
  3 KB (296 words) - 15:18, 15 August 2022
• BYOBU
  Byobu is a GPLv3 open source text-based window manager and terminal multiplexer. It was originally designed t
  3 KB (313 words) - 19:50, 11 July 2022
• Seq crumbs
  seq_crumbs is modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and
  3 KB (328 words) - 15:12, 27 May 2022
• EDirect
  ...I api you need to have an api key. Log into your ncbi account and copy the text of the api key generated in [https://www.ncbi.nlm.nih.gov/account/settings/
  3 KB (357 words) - 14:55, 15 August 2022
• Quarto
  Author using Jupyter notebooks or with plain text markdown in your favorite editor.
  3 KB (327 words) - 14:09, 27 February 2024
• GUI Programs
  ...application is in and run it. Do not analyze data this way, but running a text editor, a web browser to log in and get an api token from a remote service
  2 KB (390 words) - 14:42, 30 January 2023
• Gawk
  ...many computer users, you would frequently like to make changes in various text files wherever certain patterns appear, or extract data from parts of certa
  3 KB (356 words) - 16:55, 15 August 2022
• Jellyfish
  which can be translated into a human-readable text format using the
  3 KB (333 words) - 19:27, 12 August 2022
• QUAST
  ...the manual). A comprehensive analysis results in summary tables (in plain text, tab-separated and LaTeX formats) and colorful plots. The tool also produce
  3 KB (361 words) - 21:01, 21 August 2022
• AGAT
  The GTF/GFF formats are 9-column text formats used to describe and represent genomic features. The formats have q
  3 KB (346 words) - 22:01, 15 July 2020
• Create SSH Keys Using Putty
  ...he private key should be a “.ppk" file and the public key can be a regular text file “.txt". ''Note:'' You can also use a text editor in a terminal or a console session in [[Open OnDemand]] to edit ~/.s
  7 KB (1,195 words) - 13:39, 26 June 2023
• Moni
  MONI index uses the prefix-free parsing of the text [2][3] to build the Burrows-Wheeler Transform (BWT) of the reference genome
  3 KB (341 words) - 13:31, 15 August 2022
• STAR-CCM+
  ...ation setup and enter the provided PoD key into the 'Power-On-Demand Key:' text field. See [[GUI Programs]] for reference.
  3 KB (363 words) - 16:01, 22 August 2022
• Vfuparr
  The core workflow involves users supplying a SMILES text file, the receptor of interest, and the docking parameters to facilitate la
  3 KB (392 words) - 20:35, 9 April 2024
• Circos
  Circos can be automated. It is controlled by plain-text configuration files, which makes it easily incorporated into data acquisiti
  3 KB (409 words) - 13:35, 15 August 2022
• ImageMagick
  ...nsform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bézier curves.
  3 KB (380 words) - 18:46, 15 August 2022
• MOSAIK
  ...sequence coordinates. Finally, MosaikText converts alignments to different text-based formats.
  3 KB (414 words) - 11:59, 19 August 2022
• New user training
  * About 70,000 cores [[File:Hpg3-rc-header.png|300px|right|text-top|alt="A row of HiPerGator 3 compute node racks"]] * The HiPerGator AI cluster has [[File:Hpgai.slider.png|300px|right|text-top|alt="A photo of a row of HiPerGator AI servers"]]
  16 KB (2,450 words) - 15:00, 14 August 2023
• Rsync
  | style="text-align:center;" colspan="2"| '''Some common options used with rsync commands
  3 KB (506 words) - 21:25, 28 July 2023

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