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• XWAS
  ...ncorporate the X chromosome into GWAS, hence enabling discoveries of novel loci implicated in many diseases and in their sexual dimorphism.
  3 KB (383 words) - 13:27, 31 August 2020
• SMR
  ...erest using summary-level data from GWAS and expression quantitative trait loci (eQTL) studies (Zhu et al. 2016 Nature Genetics). The methodology can be in
  3 KB (362 words) - 18:27, 19 August 2021
• Liftoff
  ...transcript and gene structure. If two genes incorrectly map to overlapping loci, Liftoff determines which gene is most-likely mis-mapped, and attempts to r
  3 KB (399 words) - 13:14, 23 September 2020
• Impg
  ...genomes described in alignments. In effect, it lets us pick up homologous loci from all genomes mapped onto our specific target region. This is particular
  3 KB (392 words) - 21:22, 10 April 2024
• SHEsisPlus
  ...age disequilibrium and haplotype construction at multiallelic polymorphism loci, compatible for both diploid and polyploid species.
  3 KB (344 words) - 15:04, 19 August 2022
• BamBam
  ...e BAM files and writes out a ".snp" file with a summary of all polymorphic loci
  3 KB (456 words) - 18:00, 12 August 2022
• Stacks
  Stacks is a software pipeline for building loci out of a set of short-read sequenced samples. Stacks was developed for the
  4 KB (658 words) - 21:20, 2 January 2023

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