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• FEELnc
  This document is intended to give a technical description of the FEELnc pipeline in order to annotate long non-coding RNAs (lncRNAs) based on reconstructed
  3 KB (322 words) - 18:53, 10 July 2020
• Model Card Toolkit
  ...to a model's development and performance. Integrating the MCT into your ML pipeline enables the sharing model metadata and metrics with researchers, developers
  3 KB (333 words) - 15:31, 10 July 2023
• MarginPolish
  ...h serves as a standalone assembly polisher, it is also part of an assembly pipeline which includes an ultrafast nanopore assembler Shasta and a multi-task RNN
  3 KB (320 words) - 21:22, 6 December 2019
• FGMP
  FGMP (Fungal Genome Mapping Project) is a bioinformatic pipeline designed to provide in an unbiased manner an estimation of genome completen
  3 KB (326 words) - 21:20, 6 December 2019
• Methylpy
  Methylpy, a pyhton-based analysis pipeline for
  3 KB (309 words) - 21:21, 6 December 2019
• NpScarf
  ...draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbia
  3 KB (326 words) - 14:29, 4 September 2020
• CCMetagen
  CCMetagen is a pipeline to classify organisms in metagenomes or metatranscriptomes accurately.
  3 KB (327 words) - 22:45, 3 January 2022
• Crossmapper
  Crossmapper is an automated bioinformatics pipeline for asessing the rate of read crossmapping when two or more organisms are s
  3 KB (326 words) - 17:40, 31 January 2022
• Amphora2
  An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
  3 KB (333 words) - 17:35, 10 June 2022
• AMOS
  ...so that new contributions can be easily inserted into an existing assembly pipeline. This modular design will foster the development of new assembly algorithms
  3 KB (344 words) - 12:41, 12 August 2022
• Talon
  A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification. Dana Wyman, Gabriela Balder
  3 KB (321 words) - 15:13, 23 September 2022
• ElPrep
  ...of the number of processing steps that need to be applied in a particular pipeline, greatly improving runtime performance.
  3 KB (345 words) - 21:20, 6 December 2019
• Pdb2pqr
  *PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Dolinsky TJ
  3 KB (336 words) - 17:51, 15 August 2022
• AutoDock-GPU
  included a batched ligand pipeline developed by Aaron Scheinberg from
  3 KB (332 words) - 15:25, 12 August 2022
• Seqmule
  ...ent, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file. SeqMule al
  3 KB (342 words) - 19:06, 15 September 2022
• Finder
  finder is a gene annotator pipeline which automates the process of
  3 KB (345 words) - 16:42, 15 August 2022
• WU BLAST
  ...st error checking identifies problems sooner; flexible identifiers improve pipeline design and management
  3 KB (356 words) - 17:44, 22 August 2022
• Hapdup
  HapDup (haplotype duplicator) is a pipeline to convert a haploid long read assembly into a dual diploid assembly. The r
  3 KB (324 words) - 21:07, 7 April 2022
• Haplomerger2
  HM2 is an easy-to-use automated pipeline for improving geneome assembly in the post-assembly stage. It consists of a
  3 KB (339 words) - 19:05, 12 August 2022
• Hapsembler
  The Hapsembler pipeline is described in contain three main stages:
  3 KB (332 words) - 18:15, 15 August 2022

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