Search results
Jump to navigation
Jump to search
Page title matches
- |{{#vardefine:app|pacbio}} SMRT® Analysis is PacBio's bioinformatics software suite for analyzing single molecule, real-time DN2 KB (250 words) - 20:10, 24 August 2022
Page text matches
- |{{#vardefine:app|pacbio}} SMRT® Analysis is PacBio's bioinformatics software suite for analyzing single molecule, real-time DN2 KB (250 words) - 20:10, 24 August 2022
- ...ware for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBio HiFi reads to produce high-quality phased genome assemblies.2 KB (268 words) - 21:58, 27 April 2022
- PacBio Pigeon is a PacBio Transcript Toolkit that contains tools to classify and filter full-length t2 KB (275 words) - 22:37, 21 January 2024
- ...ences, though a platform dependent consensus polish tools (e.g. Quiver for PacBio or Nanopolish for ONT) are still required for higher accuracy.2 KB (296 words) - 21:24, 6 December 2019
- ...a new clustering technique, allows to process the ever-increasing yield of PacBio machines with similar performance to IsoSeq versions 1 and 2.3 KB (295 words) - 20:10, 24 August 2022
- ...rcode demultiplexer, is the standard tool to identify barcode sequences in PacBio single-molecule sequencing data. Starting in SMRT Link v5.1.0, it is the to3 KB (299 words) - 19:57, 15 August 2022
- Available methods: snv-pacbio, snv-illumina, snv-pacbio-vc, snv-illumina-vc3 KB (301 words) - 20:24, 1 May 2024
- ...long read data. The input includes a contig file, long reads (PacBio CLR, PacBio HiFi, Oxford Nanopore, or mixed platform), and a reference genome (optional3 KB (319 words) - 18:50, 15 August 2022
- ...U cores, minimap can map 1.6Gbp PacBio reads to human in 2.5 minutes, 1Gbp PacBio E. coli reads to pre-indexed 9.6Gbp bacterial genomes in 3 minutes, to pre-3 KB (385 words) - 19:07, 10 June 2022
- ...mbly and reconstruction from the source .bax.h5 HDF5 files produced by the PacBio original uncompressed file. In this way, users of a PacBio can keep the data needed3 KB (441 words) - 19:20, 10 June 2022
- Workflow Engine for working with PacBio data.2 KB (239 words) - 18:05, 15 August 2022
- PacBio tools: RepeatAnalysis, AmpFreeTools, Lima2 KB (238 words) - 14:34, 26 August 2020
- python package for interacting with PacBio data2 KB (244 words) - 20:16, 12 August 2022
- pbalign maps PacBio reads to reference sequences.2 KB (243 words) - 20:15, 12 August 2022
- bax2bam converts the legacy PacBio basecall format (bax.h5) into the BAM basecall format2 KB (253 words) - 14:05, 10 December 2019
- Asset can use sequencing data from four platforms (Pacbio, 10X, Bionano, HiC) to accumulate the support evidence for a de novo assemb2 KB (253 words) - 20:07, 15 June 2023
- ...er tool, which allows you to apply the Quiver or Arrow algorithm to mapped PacBio reads to get consensus and variant calls.2 KB (256 words) - 15:05, 10 June 2022
- Program for correcting sequencing errors in long reads (e.g., PacBio, Oxford Nanopore) using highly accurate short reads (e.g., Illumina).2 KB (258 words) - 13:38, 22 April 2021
- OrganelleRef_PBA is a script to perform a de-novo PacBio assemblies of any organelle (chloroplast or mitochondrial genomes) using se2 KB (258 words) - 21:22, 6 December 2019
- TRGT is a tool for targeted genotyping of tandem repeats from PacBio HiFi data. In addition to the basic size genotyping, TRGT profiles sequence2 KB (273 words) - 14:45, 28 July 2023