Difference between revisions of "SparCC"

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__NOTOC__
 
__NOTOC__
 
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[[Category:Software]][[Category:Library]]
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[[Category:Software]][[Category:Biology]]
 
{|<!--Main settings - REQUIRED-->
 
{|<!--Main settings - REQUIRED-->
 
|{{#vardefine:app|SparCC}}
 
|{{#vardefine:app|SparCC}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
[[Modules|modules documentation]]
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
*python
 
*{{#lowercase:{{#var:app}}}}
 
 
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Latest revision as of 15:47, 22 August 2022

Description

SparCC website  

SparCC is mainly used for calculating correlations in compositional data. It can also be used to calculate sample diversity, rank abundance plots, etc.

Environment Modules

Run module spider SparCC to find out what environment modules are available for this application.

System Variables

  • HPC_SPARCC_DIR - installation directory
  • HPC_SPARCC_BIN - executable directory
  • HPC_SPARCC_LIB - library directory